#NEXUS [written Thu Apr 11 11:10:07 CEST 2019 by Mesquite version 3.31 (build 859) at dse603ad4.mnhn.fr/10.8.144.246] BEGIN TAXA; TITLE Untitled_Taxa_Block; DIMENSIONS NTAX=38; TAXLABELS Ligulalepis Dialipina Cheirolepis Howqualepis Mimia Moythomasia Guiyu Meemannia Psarolepis Achoania Miguashaia Gavinia Euporosteus Diplocercides Latimeria Bukkanodus Strunius Qingmenodus Onychodus Grossius Styloichthys Porolepis Glyptolepis Powichthys Youngolepis Diabolepis Uranolophus Dipterus Tungsenia Kenichthys Osteolepis Gogonasus Eusthenopteron Panderichthys Elpistostege Tiktaalik Ichthyostega Selenodus ; END; BEGIN CHARACTERS; TITLE Lu_et_al.2016; DIMENSIONS NCHAR=242; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; CHARSTATELABELS 1 Postrostral / absent_ postrostral_mosaic_of_small_variable_bones 'large_median_postrostral,_with_or_without_accessory_bones' paired_E_bones____, 2 Mesial_margin_of_nasal / not_notched_ notched_, 3 Number_of_nasals / many one_or_two__, 4 Processus_dermintermedius / absent_ present_, 5 Position_of_posterior_nostril / 'external,_far_from_jaw_margin' 'external,_close_to_jaw_margin' palatal, 6 Posterior_nostril / associated_with_orbit not_associated_with_orbit_, 7 Posterior_nostril_enclosed_posteriorly_by_preorbital_or_preorbital_process_of_premaxilla / absent present, 8 'Supraorbital (sensu Cloutier & Ahlberg, 1996)' / absent_ present_, 9 Number_of_supraorbitals / one_ two_ more_than_two__, 10 'Supraorbital, preorbital and nasal' / unfused_ fused_, 11 Contact_between_parietal_and_supraorbital / present_ absent_, 12 'Posterior supraorbital (postfrontal) extends anterior of orbit' / yes no, 13 Relative_size_of_anterior_supraorbital_and_posterior_supraorbital / similar prefrontal_much_bigger__, 14 'T-shaped dermosphenotic' / absent_ present_, 15 Intertemporal / present absent, 16 'Tectal (sensu Cloutier & Ahlberg, 1996)' / absent_ present_, 17 Postspiracular / absent present, 18 Anterior_margin_of_parietal / between_or_in_front_of_orbits_ slightly_posterior_to_orbits_ much_posterior_to_orbits_, 19 Pineal_foramen / present absent, 20 'Pineal eminence (in those taxa with no pineal foramen)' / absent present, 21 'Location of pineal foramen/eminence' / level_with_posterior_margin_of_orbits_ well_posterior_to_orbits_ level_with_midway_of_orbits, 22 'Parietals surround pineal foramen/eminence' / yes no, 23 Dermal_intracranial_joint / absent_ present_, 24 Margins_of_postparietals_and_parietals_participating_in_dermal_intracranial_joint / smooth jagged, 25 Length_of_parietal_versus_postparietal / equal_or_Ppa_longer_than_Pa_ Pa_up_to_2_times_Ppa_, 26 Parietal_portion_of_skull_roof_relative_to_postparietal_portion_in_length / parietal_portion_roughly_as_long_as_postparietal_portion parietal_portion_much_longer_postparietal_portion parietal_portion_much_shorter_than_postparietal_portion, 27 Postparietal_narrowing_posteriorly / absent present, 28 'Length/width index of the postparietal' / ?150 '150-300' ?300, 29 Complete_enclosure_of_spiracle_by_bones_bearing_the_otic_and_infraorbital_canals / absent present, 30 Posterior_margin_of_skull_roof / embayed straight_or_convex, 31 Number_of_marginal_bones_alongside_postparietal / single_ two_or_more_, 32 Extratemporal / absent__ present_, 33 Number_of_extrascapulars / uneven_ paired_, 34 Position_of_orbits / lateral_and_widely_separated dorsal_and_close_together_, 35 Proportion_of_skull_roof_lying_anterior_to_middle_of_orbits / '<50%' 50% '>50%__', 36 Position_of_anterior_nostril / facial 'edge_of_mouth_(or_marginal)' palatal_, 37 'Palatal opening surrounded by premaxilla, maxilla, dermopalatine, and vomer' / absent_ present_, 38 'Palatal opening medially enclosed by dermopalatine and vomer ("choana" sensu lato)' / absent present, 39 Number_of_tectals / one_ two_or_more, 40 'B-bone' / absent_ present_, 41 Paired_bones_anterior_to_parietals / absent_ present_, 42 Width_of_ethmoid_relative_to_length_from_snout_tip_to_posterior_margin_of_parietals / more_than_80% '70-_80%' '50-70%' less_than_40%_, 43 Spiracle / 'absent-small_hole' narrow_groove wide_notch, 44 Contact_between_extratemporal_and_supratemporal / absent_ present_, 45 Posterior_margin_of_tabulars / anterior_to_posterior_margin_of_postparietals level_with_posterior_margin_of_postparietals, 46 Extrascapular_bones / present absent, 47 Median_extrascapular_overlap / _median_extrascapular_overlapped_by_lateral_extrascapulars_ median_extrascapular_overlapping_lateral_extrascapulars _median_extrascapular_abutting_lateral_extrascapulars_, 48 Interorbital_space / broad narrow, 49 Internasal_pits / undifferentiated_ strong_midline_ridge_but_shallow_pits_ 'deep_pear-shaped_pits' absent, 50 Fenestra_ventralis / absent_ present_ common_ventral_fenestra_for_anterior_and_posterior_nostrils, 51 Postorbital_process_on_braincase / present_ absent_, 52 Tectum_orbitale / narrow_ extensive_, 53 Large_median_opening_and_several_small_dorsolateral_openings_in_postnasal_wall / absent_ present_, 54 Ethmoid_articulation_for_palatoquadrate / placed_on_postnasal_wall majority_of_facet_located_anterior_to_postnasal_wall extends_posteriorly_to_the_level_of_N.II, 55 Autopalatine_fossa_bearing_unfinished_articular_surfaces / absent present, 56 Eye_stalk_or_unfinished_area_for_similar_structure / present absent, 57 Postorbital_pillar / absent_ present_, 58 Basipterygoid_process / 'small_knob-like_process' developed_as_a_broad_platform, 59 Position_of_exit_of_pituitary_vein / in_front_of_basipterygoid_process dorsal__to_vertical_portion_of_basipterygoid_process posterior_to_basipterygoid_process, 60 Unconstricted_cranial_notochord / absent_ present_, 61 'Descending process of sphenoid (with its posterior extremity lacking periostegeal lining)' / absent_ present_, 62 Endoskeletal_intracranial_joint / absent_ present_, 63 Orientation_of_intracranial_joint / posteroventrally_slanting_ vertical_or_anteroventrally_slanting_, 64 Position_of_intracranial_joint_relative_to_cranial_nerves / joint_through_profundus_foramen_ joint_through_or_behind_trigeminal_foramen, 65 Processus_connectens / absent present, 66 Processus_connectens / 'knob-like,_not_well-develped' 'long,_well-developed', 67 Proportion_of_neurocranium / ethmosphenoid_shorter_than_or_equal_in_length_to_otoccipital ethmosphenoid_much_longer_than_otoccipital, 68 Articulation_facet_with_hyomandibular / single_headed_ 'double-headed', 69 Position_of_lateral_commissure / overlying_root_of_N.V posterior_to_root_of_N.V, 70 Vestibular_fontanelles / absent_ present_, 71 Accessory_fenestration_in_otic_capsule / absent present, 72 Attachment_for_basicranial_muscle / anterior_to_or_level_with_the_lateral_commissure posterior_to_or_level_with_the_lateral_commissure, 73 Parachordal_plates / separated_from_the_otic_capsule 'sutured_or_co-mineralised_with_the_otic_capsule', 74 Enclosed_canal_for_dorsal_aorta / absent present, 75 Otoccipital_fissure / absent present, 76 Basicranial_fenestra / absent present, 77 Posttemporal_fossae / absent_ present_, 78 Extent_of_crista_parotica / does_not_reach_posterior_margin_of_tabular reaches_posterior_margin_of_tabular, 79 'Otical process (an outgrowth from the lateral wall of the braincase penetrated by the branches of the r. oticus lateralis)' / absent_ present_, 80 Supraotic_cavity_proper / absent_ present_, 81 Lateral_cranial_canal / absent_ present_, 82 'Foramina (similar to infradentary foramina) on cheek bones' / absent_ present_, 83 Number_of_sclerotic_plates / four_or_less_ more_than_four_, 84 Jugal_extends_anterior_to_middle_of_orbit / no yes, 85 Lacrimal / not_fused_with_jugal fused_with_jugal_, 86 Contact_between_postorbital_and_lacrimal / absent present, 87 Squamosal / absent_ present_, 88 Quadratojugal / 'present,_small' 'present,_large' absent, 89 Preopercular / 'large,_broad' 'large,_bar-like' small, 90 'Quadratojugal, squamosal and preopercular fused' / no_ yes_, 91 'Jugal-quadratojugal contact' / absent_ present_, 92 'Contact between most posterior major bone of cheek bearing preopercular canal (''preopercular'') and maxilla' / present_ absent_, 93 'Most posterior major bone of cheek bearing preopercular canal (''preopercular'') extending forward, close to orbit' / absent_ present_, 94 Number_of_cheek_bones_bearing_preopercular_canal_posterior_to_jugal / one two, 95 'Bone bearing both quadratojugal pit-line and preopercular canal' / absent present, 96 Subsquamosals / absent present, 97 Preoperculosubmandibular / absent present_, 98 Dermohyal / absent_ present_, 99 Vomerine_fangs / absent_ present_, 100 Vomeral_area_with_grooves_and_raised_areas / absent_ present_, 101 Posterior_process_of_vomers / absent present, 102 Articulation_of_vomers / vomers_not_articulating_with_each_other vomers_articulating_with_each_other_, 103 Position_of_parasphenoid / beneath_sphenethmoid_part_of_endocranium___ 'beneath_sphenethmoid_and_otico-occipital_part', 104 Denticulated_field_of_parasphenoid / without_spiracular_groove_ with_spiracular_groove_, 105 Ascending_process_of_parasphenoid / absent_ present_, 106 'Parasphenoid/vomer' / not_sutured_ sutured_with_each_other_, 107 Shape_of_parasphenoid_denticle_field / 'lozenge-shaped' 'broad,_splint-shaped' 'slender,_splint-shaped', 108 Parasphenoid_denticle_field_with_multifid_anterior_margin / absent present, 109 Parasphenoid_denticle_field_with_anteriorly_divergent_lateral_margins / absent present, 110 Parasphenoid_denticle_field / terminates_at_or_anterior_to_level_of_foramina_for_internal_carotid_arteries extends_posterior_to_foramina_for_internal_carotid_arteries, 111 Posterior_carotid_opening_in_parasphenoid / large small absent_, 112 Posterior_margin_of_palatoquadrate / _sloping_forward erect_or_sloping_backward_, 113 Dentition_of_palatoquadrate_complex / marginal_teeth_ tooth_plates_, 114 Fenestra_in_palatoquadrate_marking_position_of_basal_articulation / absent present, 115 Articulation_of_pterygoids / _pterygoids_not_articulating_with_each_other_ _pterygoids_articulating_with_each_other, 116 Entopterygoid / elongated_ triangular_, 117 Proportions_of_entopterygoid / anterior_end_level_with_processus_ascendens anterior_end_considerably_anterior_to_processus_ascendens, 118 Number_of_dermopalatines / multiple single, 119 Subtermial_mouth / absent present, 120 Premaxilla / absent_ present_, 121 Enlarged_anterior_tooth_on_premaxilla / absent_ present_, 122 Premaxillae_with_inturned_symphysial_processes / absent present, 123 Premaxilla_forming_part_of_orbit / absent_ present_, 124 Contact_of_premaxilla_with_lacrimal / posteriorly_ ventrally_ absent, 125 Preorbital_process_of_premaxilla / absent_ present_, 126 Maxilla / absent_ present_, 127 Posterodorsal_process_of_maxilla / present_ very_weak_or_absent_, 128 'Posterior expansion of maxilla (maxilla cleaver-shaped)' / present_ absent_, 129 Contribution_by_maxilla_to_posterior_margin_of_cheek / present absent, 130 Strong_ascending_flexion_of_symphysial_region_of_mandible / absent present, 131 Large_ventromesially_directed_flange_of_symphysial_region_of_mandible / absent present, 132 Infradentary_foramina / always_present variable_ always_absent_, 133 Length_of_dentary / long_ short_with_lip_fold_, 134 Dentary_fang_pair / absent_ present_, 135 Marginal_teeth_on_dentary / present_ absent_, 136 Teeth_of_dentary / reaching_anterior_end_of_dentary_ not_reaching_anterior_end_, 137 Splenial / absent_ present_, 138 Splenial / not_sutured_to_prearticular_ sutured_to_prearticular_, 139 Postsplenial / present_ absent_, 140 Angular_and_prearticular / separated_by_ventral_exposure_of_Meckelian_bone_ in_contact_, 141 Raised_crest_on_angular / absent_ present_, 142 Surangular / absent_ present_, 143 Parasymphysial_plate / detachable_tooth_whorl_ 'long,_sutured_to_coronoid,_denticulated_or_with_tooth_row' 'short,_rounded,_not_sutured_to_coronoid,_denticulated' absent, 144 Enamel_ribs_on_parasymphysial_tooth_whorl / absent present, 145 Number_of_coronoids / more_than_three three, 146 'Fangs of coronoids (sensu stricto)' / absent_ present_, 147 Marginal_denticle_band_on_coronoids / 'broad_band,_at_least_posteriorly_' 'narrow_band_with_2-4_denticle_rows_' single_tooth_row__or_absent, 148 Coronoid_proportions / 'posterior_coronoid_same_length_as_middle_coronoid,_or_shorter' posterior_coronoid_significantly_longer_than_middle_coronoid, 149 Condition_of_most_posterior_coronoid / not_distinctly_differentiated_from_other_coronoids well_developed_and_oriented_vertically, 150 Teeth_radial_rows_on_prearticular / absent_ present_, 151 'Linear, subparallel ridges of remodeled denticles on dermal bones lining the oral cavity' / absent_ present_, 152 'Prearticular - dentary contact' / present_ absent_, 153 'Anterior mandibular (precoronoid) fossa' / absent_ present_, 154 Labial_pit / absent present_, 155 Large_facet_posterior_to_glenoid / absent_ present_, 156 Meckelian_bone_exposed_immediately_anterior_to_first_coronoid / yes_ no_, 157 Hyomandibular / long short, 158 Foramen_in_hyomandibular / absent present, 159 'Endoskeletal ''urohyal''' / absent present, 160 Urohyal_morphology / 'dorsoventrally_compressed_and_rod-like,_may_bifurcate_posteriorly' vertical_plate, 161 Opercular / present absent, 162 Branchiostegal_rays / present absent, 163 Number_of_branchiostegal_rays_per_side / ten_or_more_ two_to_seven_ one_, 164 Median_gular / present_ absent_, 165 Size_of_median_gular / small large, 166 Size_of_lateral_gular / lateral_gular_and_brachiostegal_rays_of_similar_size_ lateral_gular_covering_approximately_half_the_intermandibular_space_, 167 Submandibulars / absent_ present_, 168 Width_of_submandibulars / narrow_ broad, 169 Pore_clusters_on_cosmine / absent_ present_, 170 Ethmoid_commissure / present_ absent__, 171 Course_of_ethmoid_commissure / middle_portion_through_median_rostral_ sutural_course_ through_bone_center_of_premaxilla_, 172 'Position of anterior pit-line' / on_postparietal_ on_parietal_, 173 'Middle pit-line' / 'on_the_same_lineation_as_the_tabular_pit-line' 'not_on_the_same_lineation_as_the_tabular_pit-line', 174 'Middle and posterior pit-lines on postparietal' / posteriorly_situated mesially_situated, 175 Course_of_supraorbital_canal / between_anterior_and_posterior_nostrils_ anterior_to_both_nostrils_, 176 Course_of_supraorbital_canal / straight_ 'lyre-shaped', 177 Posterior_end_of_supraorbital_canal / in_postparietal_ in_parietal_ in_intertemporal_, 178 Contact_between_otic_and_supraorbital_canals / not_in_contact_ in_contact_, 179 Contact_of_supraorbital_and_infraorbital_canals / _in_contact_rostrally_ not_in_contact_rostrally, 180 Otic_canal / runs_through_skull_roof follows_edge_of_skull_roof, 181 Course_of_otic_canal_in_relation_to_anterior_portion_of_postparietal / through_marginal_bones_alongside_postparietal_ along_the_margin_of_postparietal_ through_postparietal_, 182 'Sensory canal or pit-line associated with maxilla' / absent present, 183 Jugal_canal / present_ absent_, 184 Course_of_mandibular_canal / not_passing_through_most_posterior_infradentary_ passing_through_most_posterior_infradentary, 185 Mandibular_sensory_canal_through_the_lowermost_part_of_the_infradentary_series_with_many_tubes / absent present, 186 Course_of_mandibular_canal / _passing_through_dentary_ not_passing_through_dentary, 187 'Anterior pit-line of lower jaw' / not_developed_into_enclosed_canal_ developed_into_enclosed_canal_linking_oral_and_mandibular_canals_, 188 'Middle pit-line of lower jaw' / _not_developed_into_enclosed_canal developed_into_enclosed_oral_canal_or_intermediate_morphology__, 189 Extracleithrum / absent present, 190 Presupracleithrum / absent_ present_, 191 Anocleithrum / element_developed_as_postcleithrum_ element_developed_as_anocleithrum_sensu_stricto_ bone_absent, 192 Dorsal_end_of_cleithrum / pointed_ broad_and_rounded_, 193 'Dorsal cleithrum (AL of the Placodermi), ventral cleithrum (AVL of the Placodermi) and pectoral spine (SP of the Placodermi)' / not_fused_ fused_, 194 Paired_pectoral_spines / absent_ present_, 195 Relationship_of_clavicle_to_cleithrum / ascending_process_of_clavicle_overlapping_cleithrum_laterally_ 'ascending_process_of_clavicle_wrapping_round_anterior_edge_of_cleithrum,_overlapping_it_both_laterally_and_mesially', 196 Interclavicle / absent_ present_, 197 Triradiate_scapulocoracoid / absent_ present_, 198 Subscapular_foramen / absent_ present_, 199 Coracoid_plate / absent present_and_extends_ventromedially, 200 Glenoid_orientation / 'posterior_and/or_ventral_orientation' lateral_component_to_glenoid_orientation, 201 Pectoral_fin_endoskeleton / 'extends_far_beyond_body_wall_(fins_lobate)' 'barely_extends_beyond_body_wall_(fins_not_lobate)', 202 Endoskeletal_supports_in_pectoral_fin / multiple_elements_articulating_with_girdle_ 'single_element_("humerus")_articulating_with_girdle', 203 Pectoral_propterygium / absent_ present_, 204 Axis_of_pectoral_fin_skeleton / no_more_than_5_axial_elements_ more_than_5_axial_elements_, 205 Pectoral_fin_radials / most_axial_elements_bearing_only_preaxial_radials_ symmetrical_array_of_preaxial_and_postaxial_radials__, 206 Pectoral_fin_radials / jointed unjointed, 207 Dorsal_fin / double_ single_, 208 Dorsal_and_anal_fins / present_ absent_, 209 Median_fin_spines / absent_ present_, 210 Pelvic_fin / long_ short_insertion_, 211 Pelvic_fin_endoskeleton / 'extends_far_beyond_body_wall_(fins_lobate)' 'barely_extends_beyond_body_wall_(fins_not_lobate)', 212 Caudal_fin / heterocercal_ triphycercal__ diphycercal, 213 Relative_size_of_epichordal_and_hypochordal_lobes_of_caudal_fin / epichordal_lobe_less_developed_than_hypochordal epichordals_and_hypochordal_lobes_equally_developed_ epichordal_lobe_more_developed_than_hypochordal, 214 Supraneural_spines / present_ absent_, 215 Well_ossified_ribs / absent_ present_, 216 Expanded_ribs / absent present, 217 Scales / rhombic_ intermediate_between_rhombic_and_round_ round, 218 Scales_with_interlocking_pegs_and_sockets / absent present, 219 Peg_on_rhombic_scale / narrow_ broad_, 220 'Anterodorsal peg-like process on scale' / absent_ present_, 221 Epichordal_lepidotrichia_in_caudal_fin / absent_ present_, 222 Fringing_fulcra / absent present_as_modified_distal_tips_of_lepidotrichia 'present_as_''true''_fringing_fulcra', 223 Basal_scutes_on_fins / absent_ present_, 224 Dermal_bone_surface_with_large_openings_of_pore_canals / absent_ present_, 225 'Ganoine (defined as single or multilayered enamel covering with fine tubercles or very smooth surface, with no pores or very fine pores of vascular cavities)' / absent_ present_, 226 Rostral_organ / absent present, 227 Ramified_tubules_in_the_snout_of_braincase / absent_ present_, 228 Westoll_lines / absent present_, 229 Acrodin / absent_ present_, 230 Plicidentine / absent simple_ labyrinthodont_ dendrodont_, 231 Syndentine / absent_ present_, 232 Nasal_capsule / _round_or_triangular_shaped deep_and_enlongate, 233 Olfactory_tracts / 'short, no longer than forebrain' longer_than_forebrain, 234 Angle_of_olfactory_tracts / '<90° ' ?90°, 235 Pineal_and_parapineal_organ / side_by_side_situated anterior_posterior_situated_, 236 Hypophysial_fossa / ventrally_extended anteroventrally_extended, 237 Hypophysial_fossa / with_posterior_lobe_ without_posterior_lobe, 238 Mesencephalon / developed_ narrow_and_short_, 239 Sacculus_of_inner_ear / not_bulging_laterally bulging_laterally, 240 The_length_of_mesencephalon / similar_length_to_diencephalon longer_than_diencephalon, 241 The_exit_of_oculomotor_nerve_in / in_mesencephalon in_diencephalon, 242 The_top_of_the_labyrinth_cavity_in_lateral_view / higher_than_that_of_the_brain_cavity lower_than_or_about_the_same_level_with_that_of_the_brain_cavity ; MATRIX Ligulalepis ???????0-??--000?0????0-?0000100?00???-0?0?-1??0??010?00?02?00----00?00?0?1?0??1??????????????????????????1?????????????????????????????????????????????????????????????-????0??00?00???????????????????????????????????0101???-1??-???00????????? Dialipina 0??????{0 1}?????010?010--0-11001100?00???-0000-1????????????????0----???????????????0????0????????????????????????????????1?????1?1?0?2000?1?0?01??????????????????0?-?-10--??????010100??1??????00?00?????1?????0000111???01011{1 2}0-1??-000??????????? Cheirolepis 0{0 1}1001110010-1{0 1}010{0 1}0210-00001000100000-0000-10-??0???????????0----?0????11???????000000?1000100?010???000?101??0?100?0?100{0 1}00110000200000-1?003?00000000000?00??0000000--00???0000100010?0?00{0 1}001000????001??11000?00???00-0010-100-010??????????? Howqualepis 011000-0-1---100000-000-1100100010000?-0000-10-1?0?????????0?0----?0?1??1110?????00000001000100001?0??01101111?0??0??001??10111000020?0?0-10003-000?0000000?00??0000000--000??0000?00?10?00001001000????10??0?10001001??0101010-10?-100?????0????? Mimia 011000-0-1---100000-000-11001000100000-0000-10-130010001002010----10010?11100-01100000001000100001000001001101000100?00100101110000200000-10003-000000000001010?0000000--000?000001000100000010010010000101001100010000?0101020-100-10001?-0?00001 Moythomasia 011000-0-1---100?00-000-11001000100000-0000-10-130010001002000----10010?11100-?1100000001000100001000001101111000100?001001?1110000200000-10003-000000000001010?0000000--000?000001000100000010010010000101001100010000?0101020-100-100?11???????? Guiyu 001001110010-000?10-10110000011100000?-000?010002011?20?1??1110?0-0????????????????100??0??010000??0?000000000?0??0???010001011001120?001?00?10001100001???0????001??10?-00??01000?00??10???0100011???0???????0?1???????0101???-?00-000??????????? Meemannia 0??????0-????0???00-210-11000000?00????00??-1??????????????1?0----1???????1?0??11??????????????????????????????????????????????????0????????????0???0????0??????????????0??????010?00???0??????????????????????????????????????00??0?????????????? Psarolepis ???1011??????0???10-1?10010001???00000??000?10?020?102001111010?0-001?000?100?01?1??0?0????010??0??00000000000?0??0???01011?11100110000110000100011000010000???????001??00010011?00??1010100???0{0 1}1110000?01?????1???????01?1???100000100010110???? Achoania ???101????????????0-1?10?????????00000??00?????020?102001111110?0-????????1????????????????????????000000?0010????0???010?0?0????11000011000010?0???00010000??????????????????10??????????00?????????????01?????????????0??????1?0000??????1?????? Miguashaia 10?????12000?-1?1010--11000101100000???0000-000????????????1?????????????????????01??01200-?011000??????0??????1?0011??1??0??0---01210001010103?000?1011001?1????1-1-10--0???1?021?00-01??0010101000????0?????0001000?0?20-0100-01?00?0??????????? Gavinia 1??????12????????????????????????00????????????????????????????????1?????????????0????????????10?0?????????????????????1??0?0????0??1?0?????1???????1?????1??1??0???????-??????????????1?10????????????????????00??00???20-?100-?1?0??0??????????? Euporosteus 1?0????12?0????1?010??1100???1???00{0 1}??100?0?1??0301?01010????11111????????????????????????????????????00??1011????0???????????????????????????????????1?????????????????-0?????1??0??????????????????????????????????????????????100?????????????? Diplocercides 1?0?01?12000?-111010?1110101?1000000?0?0022-10103010?101001101111111101110011100001?101200-?011000????000?1011?1?0011?01??0?00---00210001010103-000?1011001?111001?1-10--??0?110?1?11-010100?0?1?000??????????0001?1110?20-0100-01?00?00?0?0011011 Latimeria 1?000??12000?-111010--101101010000000010020-10?03010010100110111111110010001110000??101200-??110000?0100001010?100011001?00200---00210001010103-00001011001?111001-1-10--01??1?0?1011-010100101110100?00010001000101110?20-0100-?100010000?1011011 Bukkanodus ??????????????????????????01????????????????1??????????????????????????????????????00?1?0?????????1?00?000??????0??????1000?0?????????0???????01???????????????????????????1?0??2?????0?????????????????????????????????20-0????0??0?????????????? Strunius ???????11?0?001?0010--1002010110000????0002-00???????????????1???????????????????010001200-001?00?????????????????????01?10101100112000110000101????000?00??????01-1-110???110?????00?0011000???100?0???1?????000?121???20-0100-???0000??????????? Qingmenodus ???0010???????????10--100202011??00000?0?02?0??020100001001101101101101110110?010????????????????????0?00000?0????0???0111???110???20001100??101?????????0??00???????????0011111??000???11?????????????????????????????????????0?01000010100111111 Onychodus 20000101100000110010--110212011100000000000100202010000100110110100?111?001???0?0010001200-001100????000000{0 1}00?00000000111010110010200011000010100100001000000??01-1-110-001011??1000100?100001110000000?10???000??21?0?20-0100-00?001010??01?1??? Grossius ??????????????????????1102120111000????0??0100?02????????????1???????????????????010??1?0??011?0???????????????????????1??0??1??????0?????????01????????????0???0????110-???0??????00???????????????????????????????????20-0???????0?????????????? Styloichthys ???0??0??????0????0-0?110100011??000???0000?1??0111100001111111?1001101010?10??1?1?00?11?1-?00100??00000001011????0???01????010110000?011?0?01?01???00110000?????????????0110011210000010100???1101??10??10?????????????0111???10000010??????????? Porolepis 1000010110??0-1101111110????0?01000000?000011010211110110111011010??11??00?1?10??0?000110001010110100001?010001000000?010000010110?200011000010?1110000110?0?1?000?00110100111111100100101000011101?????0?????000?0?????011010000000030???0??????? Glyptolepis 100001010010--1101110110??000?0100000010000?0010211010110111011010?11???00?1110??0?000110001010110100001?0100110000001010000010110?100011000010?111000{0 1}110?0?1100011-?10?00111111100110101000011101?0000010110000100000020-0100-000?0300110111???? Powichthys 100101010010-001?10-110-0100011100000000000010102111100101111111??0111?010110?1??????01100?10??1101000010010011000000101000?01?11011000110000100110000010000?????010011010110011100000010100?011101??1??????????????????0110???000100100110111???? Youngolepis ?001110??????0???111010-010?0111000000?0000010?011110001011110----1111101010011101?00011?1-?0010001100010010{0 1}1000?00??01000?01111010000010000100110000010000????0?10011010110011100100010100???1101?010??10?????????????0111???0001001001100010000 Diabolepis ?0011101?01??00??211010-010?011?000100?100??10?00101000101??00----??1?1???????0???????????????????010001001011??1?00??01000?0????00210001?0?013------10001??????????????0011?01110?10??1?100???????????????????????????????????00011001??????????? Uranolophus 1??0210???1??001?210-10-????0?100002--111??-?0??02??0????1???0----???0??10?0??0???????????????????0?0010??100??1??1????0----?0---0021?1?1?0?013------00?010?????0020011101-1?0?1101?0????11100111011?1????????0001?00?0?0110?0000011?01??????????? Dipterus 30002101101??0010210-10-????0?100002--?11??-101002010??101?0?0----???00?1000??0??0?0??11?01?010010??0?1-?0-????11?1????0----?0---002101?1000013------1?0?10?????00?0011101-1001111100?01?1110011101?????010110000100001010-010000011001?1????????0 Tungsenia ???1110??????0????0-20100?0001???0000???000?1??0111100010101011?100??????????????1?00?11?1-??0?????00000001?0?????0???010?0??11110?200001000011-111000?110?0???????001??1011??11?10??0010100???11???????????????????????0110???000000100010001???? Kenichthys ?0?11101100?00?1??0-0010010001110000010000001?00011100010101011?100??????????????1?00011?1-?001?00?00?00002001??0?0???0100020111101200001000011-1100000110?0????0?20011010110011210000010100?0?110??????????????????????0110???000?0010??????????? Osteolepis {1 2}0012--110000001?00-0010000001110000110000001000?110000101?1011010011?00?0?1100?00100011100101000010??000?2001200?00??010002011110?200001000011-111?00?110?001??002001101001001121000001010000111011????0???01000100010?0110101000000100111??1???? Gogonasus 20012--?10000001??0-00100000011100001100012010000110000101010110100111001011100?0010001?10010100001?01000020012000000101000201111001000010?00?1-1110000110000111001001101?0100?12100000101000?1110111000010001?001?00???0110??10?01001001?10?????? Eusthenopteron 20012--110000001100-00100100011000001100011-100001100001010101101011110010111101001000111001010000101100012001200000110100020111100200001100012-111100011000011100?00110-0010011210000010100001110111100010001000101110010-0101-000?01001110110000 Panderichthys 10012--110000001?00-100-0100011001011100132-1000011000010101011???11110?10?1100??0?000111011010000101100012001200?00111100020101100201001101012-111100011000001100201110-00??01121000001010000111011?111010001-1010221110110100-000?020??????????? Elpistostege 100??--110001-11?00-100-01000110?111110013?-1????1????????????????1????????????????1?1?????????000????????2???????00??11???2??0??0??????110????-1???0??????????????01?1?-?0???11????????0??????????????????????????????????????-?0??0????????????? Tiktaalik 100?2--11??11-1??00-100-01000110-1111100132-11-?01????0101??01????11?1??10?1?????0?1011?2?11010000??1?00012001?100001?11000??10110020100110?0?2-1111?0011000101111????1?-?0??????????0???????0?110??0111010000-1?10???1101???00-?0?-?20??????????? Ichthyostega 001?2--110011-11000-100-01000110-1111100122-11-?01?0????00?000----1??10?10100????0?100112011010000100100002001?00010110100020101100201001101011-101100010001????11?1-?0--00??0102?00000101?0002110110111010000?10-022111?0-?100-00??020??????????? Selenodus ??01010100?0-??1??????????0???1??0?0??0??????0?0?????????????????????????????????010001?00?001????????????????????????0???0??1100?????0??????????????00?????????0???????-?????1???000?0???????1?????????????????????????20-0???-00?001???????????? ; END; BEGIN SETS; TAXPARTITION * UNTITLED = 2Actinopterygii : 1 - 6, 3Basal_Sarcopterygii : 8 - 11 14 19 21, 7Friedman2007 : 12 - 13 15 17, 4Dipnomorpha : 22 - 28, 5Tetrapodomorpha : 29 - 37, Selenodus : 38; CHARPARTITION * UNTITLED = 1Skull_roof : 1 - 6 8 - 16 18 - 19 21 - 23 25 - 26 30 - 36 39 - 42 44 - 47, Default : 7 17 - 20\3 24 - 27\3 28 - 29 48 54 - 55 65 - 67 69 - 75 79 85 94 - 95 107 - 110 114 116 118 122 129 - 131 144 149 151 155 157 - 160 162 173 182 - 185\3 189 201 211 218 222 226 232 - 242, 2Neurocranium : 37 - 38 49 - 53 56 - 64 68 76 - 78 80 - 81, 3Cheek : 43 82 - 84 86 - 93 96 - 98, 4Palate : 99 - 106 111 - 113 115 117, 5Upper_Jaw : 119 - 121 123 - 128, 6Lower_Jaw : 132 - 143 145 - 148 150 152 - 154 156, 8Opercular_&_Gular_series : 161 163 - 168, 9Lateral_line_system : 169 - 172 174 - 181 183 - 184 186 - 188, a0Pectoral_girdle : 190 - 200 202, a1Postcranial_skeleton : 203 - 210 212 - 216 221, a1Scale : 217 219 - 220 223, Histology : 224 - 225 227 - 231; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = ord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 41 43 - 110 112 - 242, ord: 42 111; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 242; END; BEGIN NOTES; SUT TAXON = 38 NAME = color INTEGER = 1; SU T = 38 C = 1 N = color I = 1; SU T = 38 C = 2 N = color I = 1; SU T = 38 C = 3 N = color I = 1; SU T = 38 C = 4 N = color I = 1; SU T = 38 C = 5 N = color I = 1; SU T = 38 C = 6 N = color I = 1; SU T = 38 C = 7 N = color I = 1; SU T = 17 C = 8 N = color I = 12; SU T = 38 C = 8 N = color I = 1; SU T = 17 C = 9 N = color I = 12; SU T = 38 C = 9 N = color I = 1; SU T = 38 C = 10 N = color I = 1; SU T = 17 C = 11 N = color I = 12; SU T = 38 C = 11 N = color I = 1; SU T = 38 C = 12 N = color I = 1; SU T = 17 C = 13 N = color I = 12; SU T = 38 C = 13 N = color I = 1; SU T = 17 C = 14 N = color I = 12; SU T = 38 C = 14 N = color I = 1; SU T = 38 C = 15 N = color I = 1; SU T = 38 C = 16 N = color I = 1; SU T = 17 C = 17 N = color I = 12; SU T = 38 C = 17 N = color I = 1; SU T = 38 C = 18 N = color I = 1; SU T = 38 C = 19 N = color I = 1; SU T = 38 C = 20 N = color I = 1; SU T = 38 C = 21 N = color I = 1; SU T = 38 C = 22 N = color I = 1; SU T = 38 C = 23 N = color I = 1; SU T = 20 C = 24 N = color I = 12; SU T = 38 C = 24 N = color I = 1; SU T = 38 C = 25 N = color I = 1; SU T = 20 C = 26 N = color I = 12; SU T = 38 C = 26 N = color I = 1; SU T = 38 C = 27 N = color I = 1; SU T = 38 C = 28 N = color I = 1; SU T = 38 C = 29 N = color I = 1; SU T = 17 C = 30 N = color I = 12; SU T = 38 C = 30 N = color I = 1; SU T = 38 C = 31 N = color I = 1; SU T = 20 C = 32 N = color I = 12; SU T = 38 C = 32 N = color I = 1; SU T = 20 C = 33 N = color I = 12; SU T = 38 C = 33 N = color I = 1; SU T = 20 C = 34 N = color I = 12; SU T = 38 C = 34 N = color I = 1; SU T = 38 C = 35 N = color I = 1; SU T = 38 C = 36 N = color I = 1; SU T = 38 C = 37 N = color I = 1; SU T = 38 C = 38 N = color I = 1; SU T = 38 C = 39 N = color I = 1; SU T = 38 C = 40 N = color I = 1; SU T = 38 C = 41 N = color I = 1; SU T = 38 C = 42 N = color I = 1; SU T = 17 C = 43 N = color I = 12; SU T = 20 C = 43 N = color I = 12; SU T = 38 C = 43 N = color I = 1; SU T = 20 C = 44 N = color I = 12; SU T = 38 C = 44 N = color I = 1; SU T = 38 C = 45 N = color I = 1; SU T = 20 C = 46 N = color I = 12; SU T = 38 C = 46 N = color I = 1; SU T = 38 C = 47 N = color I = 1; SU T = 20 C = 48 N = color I = 12; SU T = 38 C = 48 N = color I = 1; SU T = 20 C = 49 N = color I = 12; SU T = 38 C = 49 N = color I = 1; SU T = 38 C = 50 N = color I = 1; SU T = 38 C = 51 N = color I = 1; SU T = 38 C = 52 N = color I = 1; SU T = 38 C = 53 N = color I = 1; SU T = 38 C = 54 N = color I = 1; SU T = 38 C = 55 N = color I = 1; SU T = 38 C = 56 N = color I = 1; SU T = 38 C = 57 N = color I = 1; SU T = 38 C = 58 N = color I = 1; SU T = 38 C = 59 N = color I = 1; SU T = 38 C = 60 N = color I = 1; SU T = 38 C = 61 N = color I = 1; SU T = 38 C = 62 N = color I = 1; SU T = 38 C = 63 N = color I = 1; SU T = 38 C = 64 N = color I = 1; SU T = 38 C = 65 N = color I = 1; SU T = 38 C = 66 N = color I = 1; SU T = 38 C = 67 N = color I = 1; SU T = 38 C = 68 N = color I = 1; SU T = 38 C = 69 N = color I = 1; SU T = 38 C = 70 N = color I = 1; SU T = 38 C = 71 N = color I = 1; SU T = 38 C = 72 N = color I = 1; SU T = 38 C = 73 N = color I = 1; SU T = 38 C = 74 N = color I = 1; SU T = 38 C = 75 N = color I = 1; SU T = 38 C = 76 N = color I = 1; SU T = 38 C = 77 N = color I = 1; SU T = 38 C = 78 N = color I = 1; SU T = 38 C = 79 N = color I = 1; SU T = 38 C = 80 N = color I = 1; SU T = 38 C = 81 N = color I = 1; SU T = 20 C = 82 N = color I = 12; SU T = 38 C = 82 N = color I = 1; SU T = 20 C = 83 N = color I = 12; SU T = 38 C = 83 N = color I = 1; SU T = 20 C = 84 N = color I = 12; SU T = 38 C = 84 N = color I = 1; SU T = 38 C = 85 N = color I = 1; SU T = 38 C = 86 N = color I = 1; SU T = 20 C = 87 N = color I = 12; SU T = 38 C = 87 N = color I = 1; SU T = 38 C = 88 N = color I = 1; SU T = 20 C = 89 N = color I = 12; SU T = 38 C = 89 N = color I = 1; SU T = 38 C = 90 N = color I = 1; SU T = 38 C = 91 N = color I = 1; SU T = 20 C = 92 N = color I = 12; SU T = 38 C = 92 N = color I = 1; SU T = 20 C = 93 N = color I = 12; SU T = 38 C = 93 N = color I = 1; SU T = 38 C = 94 N = color I = 1; SU T = 38 C = 95 N = color I = 1; SU T = 20 C = 96 N = color I = 12; SU T = 38 C = 96 N = color I = 1; SU T = 38 C = 97 N = color I = 1; SU T = 38 C = 98 N = color I = 1; SU T = 38 C = 99 N = color I = 1; SU T = 38 C = 100 N = color I = 1; SU T = 19 C = 101 N = color I = 12; SU T = 38 C = 101 N = color I = 1; SU T = 38 C = 102 N = color I = 1; SU T = 38 C = 103 N = color I = 1; SU T = 38 C = 104 N = color I = 1; SU T = 38 C = 105 N = color I = 1; SU T = 38 C = 106 N = color I = 1; SU T = 38 C = 107 N = color I = 1; SU T = 38 C = 108 N = color I = 1; SU T = 38 C = 109 N = color I = 1; SU T = 38 C = 110 N = color I = 1; SU T = 38 C = 111 N = color I = 1; SU T = 38 C = 112 N = color I = 1; SU T = 38 C = 113 N = color I = 1; SU T = 38 C = 114 N = color I = 1; SU T = 38 C = 115 N = color I = 1; SU T = 38 C = 116 N = color I = 1; SU T = 38 C = 117 N = color I = 1; SU T = 38 C = 118 N = color I = 1; SU T = 17 C = 119 N = color I = 12; SU T = 38 C = 119 N = color I = 1; SU T = 20 C = 120 N = color I = 12; SU T = 38 C = 120 N = color I = 1; SU T = 38 C = 121 N = color I = 1; SU T = 38 C = 122 N = color I = 1; SU T = 20 C = 123 N = color I = 12; SU T = 38 C = 123 N = color I = 1; SU T = 38 C = 124 N = color I = 1; SU T = 38 C = 125 N = color I = 1; SU T = 38 C = 126 N = color I = 1; SU T = 38 C = 127 N = color I = 1; SU T = 38 C = 128 N = color I = 1; SU T = 38 C = 129 N = color I = 1; SU T = 38 C = 130 N = color I = 1; SU T = 38 C = 131 N = color I = 1; SU T = 38 C = 132 N = color I = 1; SU T = 20 C = 133 N = color I = 12; SU T = 38 C = 133 N = color I = 1; SU T = 38 C = 134 N = color I = 1; SU T = 38 C = 135 N = color I = 1; SU T = 38 C = 136 N = color I = 1; SU T = 38 C = 137 N = color I = 1; SU T = 38 C = 138 N = color I = 1; SU T = 38 C = 139 N = color I = 1; SU T = 38 C = 140 N = color I = 1; SU T = 38 C = 141 N = color I = 1; SU T = 38 C = 142 N = color I = 1; SU T = 20 C = 143 N = color I = 12; SU T = 38 C = 143 N = color I = 1; SU T = 38 C = 144 N = color I = 1; SU T = 38 C = 145 N = color I = 1; SU T = 38 C = 146 N = color I = 1; SU T = 38 C = 147 N = color I = 1; SU T = 38 C = 148 N = color I = 1; SU T = 38 C = 149 N = color I = 1; SU T = 38 C = 150 N = color I = 1; SU T = 38 C = 151 N = color I = 1; SU T = 38 C = 152 N = color I = 1; SU T = 38 C = 153 N = color I = 1; SU T = 38 C = 154 N = color I = 1; SU T = 38 C = 155 N = color I = 1; SU T = 38 C = 156 N = color I = 1; SU T = 20 C = 157 N = color I = 12; SU T = 38 C = 157 N = color I = 1; SU T = 38 C = 158 N = color I = 1; SU T = 38 C = 159 N = color I = 1; SU T = 38 C = 160 N = color I = 1; SU T = 20 C = 161 N = color I = 12; SU T = 38 C = 161 N = color I = 1; SU T = 38 C = 162 N = color I = 1; SU T = 17 C = 163 N = color I = 12; SU T = 38 C = 163 N = color I = 1; SU T = 17 C = 164 N = color I = 12; SU T = 38 C = 164 N = color I = 1; SU T = 17 C = 165 N = color I = 12; SU T = 38 C = 165 N = color I = 1; SU T = 20 C = 166 N = color I = 12; SU T = 38 C = 166 N = color I = 1; SU T = 20 C = 167 N = color I = 12; SU T = 38 C = 167 N = color I = 1; SU T = 20 C = 168 N = color I = 12; SU T = 38 C = 168 N = color I = 1; SU T = 19 C = 169 N = color I = 12; SU T = 20 C = 169 N = color I = 12; SU T = 38 C = 169 N = color I = 1; SU T = 38 C = 170 N = color I = 1; SU T = 38 C = 171 N = color I = 1; SU T = 38 C = 172 N = color I = 1; SU T = 38 C = 173 N = color I = 1; SU T = 17 C = 174 N = color I = 12; SU T = 38 C = 174 N = color I = 1; SU T = 38 C = 175 N = color I = 1; SU T = 38 C = 176 N = color I = 1; SU T = 38 C = 177 N = color I = 1; SU T = 38 C = 178 N = color I = 1; SU T = 38 C = 179 N = color I = 1; SU T = 38 C = 180 N = color I = 1; SU T = 20 C = 181 N = color I = 12; SU T = 38 C = 181 N = color I = 1; SU T = 38 C = 182 N = color I = 1; SU T = 38 C = 183 N = color I = 1; SU T = 38 C = 184 N = color I = 1; SU T = 38 C = 185 N = color I = 1; SU T = 38 C = 186 N = color I = 1; SU T = 38 C = 187 N = color I = 1; SU T = 38 C = 188 N = color I = 1; SU T = 38 C = 189 N = color I = 1; SU T = 38 C = 190 N = color I = 1; SU T = 38 C = 191 N = color I = 1; SU T = 38 C = 192 N = color I = 1; SU T = 38 C = 193 N = color I = 1; SU T = 38 C = 194 N = color I = 1; SU T = 38 C = 195 N = color I = 1; SU T = 38 C = 196 N = color I = 1; SU T = 38 C = 197 N = color I = 1; SU T = 38 C = 198 N = color I = 1; SU T = 38 C = 199 N = color I = 1; SU T = 38 C = 200 N = color I = 1; SU T = 38 C = 201 N = color I = 1; SU T = 38 C = 202 N = color I = 1; SU T = 38 C = 203 N = color I = 1; SU T = 38 C = 204 N = color I = 1; SU T = 38 C = 205 N = color I = 1; SU T = 38 C = 206 N = color I = 1; SU T = 38 C = 207 N = color I = 1; SU T = 38 C = 208 N = color I = 1; SU T = 38 C = 209 N = color I = 1; SU T = 38 C = 210 N = color I = 1; SU T = 38 C = 211 N = color I = 1; SU T = 17 C = 212 N = color I = 12; SU T = 19 C = 212 N = color I = 12; SU T = 38 C = 212 N = color I = 1; SU T = 38 C = 213 N = color I = 1; SU T = 38 C = 214 N = color I = 1; SU T = 38 C = 215 N = color I = 1; SU T = 38 C = 216 N = color I = 1; SU T = 16 C = 217 N = color I = 12; SU T = 18 C = 217 N = color I = 12; SU T = 20 C = 217 N = color I = 12; SU T = 38 C = 217 N = color I = 1; SU T = 16 C = 218 N = color I = 12; SU T = 20 C = 218 N = color I = 12; SU T = 38 C = 218 N = color I = 1; SU T = 16 C = 219 N = color I = 12; SU T = 17 C = 219 N = color I = 12; SU T = 20 C = 219 N = color I = 12; SU T = 38 C = 219 N = color I = 1; SU T = 16 C = 220 N = color I = 12; SU T = 20 C = 220 N = color I = 12; SU T = 38 C = 220 N = color I = 1; SU T = 38 C = 221 N = color I = 1; SU T = 38 C = 222 N = color I = 1; SU T = 38 C = 223 N = color I = 1; SU T = 38 C = 224 N = color I = 1; SU T = 16 C = 225 N = color I = 12; SU T = 18 C = 225 N = color I = 12; SU T = 38 C = 225 N = color I = 1; SU T = 38 C = 226 N = color I = 1; SU T = 38 C = 227 N = color I = 1; SU T = 16 C = 228 N = color I = 12; SU T = 20 C = 228 N = color I = 12; SU T = 38 C = 228 N = color I = 1; SU T = 38 C = 229 N = color I = 1; SU T = 3 C = 230 N = color I = 12; SU T = 9 C = 230 N = color I = 12; SU T = 11 C = 230 N = color I = 12; SU T = 15 C = 230 N = color I = 12; SU T = 19 C = 230 N = color I = 12; SU T = 38 C = 230 N = color I = 1; SU T = 38 C = 231 N = color I = 1; SU T = 38 C = 232 N = color I = 1; SU T = 38 C = 233 N = color I = 1; SU T = 38 C = 234 N = color I = 1; SU T = 38 C = 235 N = color I = 1; SU T = 38 C = 236 N = color I = 1; SU T = 38 C = 237 N = color I = 1; SU T = 38 C = 238 N = color I = 1; SU T = 38 C = 239 N = color I = 1; SU T = 38 C = 240 N = color I = 1; SU T = 38 C = 241 N = color I = 1; SU T = 38 C = 242 N = color I = 1; END; BEGIN LABELS; TAXAGROUPLABEL 2Actinopterygii; TAXAGROUPLABEL 3Basal_Sarcopterygii; TAXAGROUPLABEL 7Friedman2007; TAXAGROUPLABEL 4Dipnomorpha; TAXAGROUPLABEL 5Tetrapodomorpha; TAXAGROUPLABEL Selenodus; CHARGROUPLABEL 1Skull_roof; CHARGROUPLABEL Default; CHARGROUPLABEL 2Neurocranium; CHARGROUPLABEL 3Cheek; CHARGROUPLABEL 4Palate; CHARGROUPLABEL 5Upper_Jaw; CHARGROUPLABEL 6Lower_Jaw; CHARGROUPLABEL 8Opercular_&_Gular_series; CHARGROUPLABEL 9Lateral_line_system; CHARGROUPLABEL a0Pectoral_girdle; CHARGROUPLABEL a1Postcranial_skeleton; CHARGROUPLABEL a1Scale; CHARGROUPLABEL Histology; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1554973807341; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6352944410516217044; tell It; setDefaultOrder 14 13 12 17 15 16 11 34 35 36 41 42 43 45 46 94 40 95 39 96 47 56 57 55 48 49 50 52 58 59 64 65 77 84 85 86 88 37; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 691074060265503772; tell It; setDefaultOrder 4 6 7 11 12 13 14 17 18 21 23 19 20 25 26 28 287 32 34 35 37 38 39 40 41 43 319 320 46 47 48 50 55 1 2 10 15 16 29 30 31 33 45 51 53 54 57 61 62 63 64 65 66 67 68 69 70 72 73 74 77 78 79 79 321 322 318 81 84 86 87 336 88 89 89 91 91 92 94 94 97 98 99 100 286 106 413 414 415 416 108 109 111 112 113 114 115 117 121 122 123 124 126 128 129 129 131 132 133 134 134 135 137 139 139 296 142 146 147 151 151 153 154 154 156 157 158 160 162 163 164 167 169 169 170 172 174 174 180 180 181 183 184 337 191 192 193 200 299 206 208 209 209 210 212 214 301 216 216 217 220 303 221 222 222 224 225 225 226 228 230 231 338 232 234 235 236 237 238 239 239 243 244 246 339 247 247 248 302 250 252 255 257 258 263 265 267 308 308 309 421 312 313 313 349 365 379 379 381 382 423 383 383 385 386 387 390 392 393 394 397 399 401 403 406 227 407 408 409 410 411 268 269 270 273 275 276 277 285 288 289 290; attachments ; endTell; mqVersion 331; checksumv 0 3 3395525102 null getNumChars 242 numChars 242 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 14603.0 sumSquares -6.917529027641082E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 845; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6352944410516217044 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6352944410516217044; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; getTable; tell It; columnWidth 1 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Dark Gray; removeColor on; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #691074060265503772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 117; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorRowNames #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal off; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #691074060265503772 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharacterStats.CharacterStats; tell It; toggleSelectedOnly off; endTell; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 748; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1554973807361; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6352944410516217044; tell It; setDefaultOrder 14 13 12 17 15 16 11 34 35 36 41 42 43 45 46 94 40 95 39 96 47 56 57 55 48 49 50 52 58 59 64 65 77 84 85 86 88 37; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 691074060265503772; tell It; setDefaultOrder 4 6 7 11 12 13 14 17 18 21 23 19 20 25 26 28 287 32 34 35 37 38 39 40 41 43 319 320 46 47 48 50 55 1 2 10 15 16 29 30 31 33 45 51 53 54 57 61 62 63 64 65 66 67 68 69 70 72 73 74 77 78 79 79 321 322 318 81 84 86 87 336 88 89 89 91 91 92 94 94 97 98 99 100 286 106 413 414 415 416 108 109 111 112 113 114 115 117 121 122 123 124 126 128 129 129 131 132 133 134 134 135 137 139 139 296 142 146 147 151 151 153 154 154 156 157 158 160 162 163 164 167 169 169 170 172 174 174 180 180 181 183 184 337 191 192 193 200 299 206 208 209 209 210 212 214 301 216 216 217 220 303 221 222 222 224 225 225 226 228 230 231 338 232 234 235 236 237 238 239 239 243 244 246 339 247 247 248 302 250 252 255 257 258 263 265 267 308 308 309 421 312 313 313 349 365 379 379 381 382 423 383 383 385 386 387 390 392 393 394 397 399 401 403 406 227 407 408 409 410 411 268 269 270 273 275 276 277 285 288 289 290; attachments ; endTell; mqVersion 331; checksumv 0 3 3395525102 null getNumChars 242 numChars 242 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 14603.0 sumSquares -6.917529027641082E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 845; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6352944410516217044 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6352944410516217044; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; getTable; tell It; columnWidth 1 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Dark Gray; removeColor on; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #691074060265503772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 117; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorRowNames #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal off; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #691074060265503772 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharacterStats.CharacterStats; tell It; toggleSelectedOnly off; endTell; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 748; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1554973807375; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6352944410516217044; tell It; setDefaultOrder 14 13 12 17 15 16 11 34 35 36 41 42 43 45 46 94 40 95 39 96 47 56 57 55 48 49 50 52 58 59 64 65 77 84 85 86 88 37; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 691074060265503772; tell It; setDefaultOrder 4 6 7 11 12 13 14 17 18 21 23 19 20 25 26 28 287 32 34 35 37 38 39 40 41 43 319 320 46 47 48 50 55 1 2 10 15 16 29 30 31 33 45 51 53 54 57 61 62 63 64 65 66 67 68 69 70 72 73 74 77 78 79 79 321 322 318 81 84 86 87 336 88 89 89 91 91 92 94 94 97 98 99 100 286 106 413 414 415 416 108 109 111 112 113 114 115 117 121 122 123 124 126 128 129 129 131 132 133 134 134 135 137 139 139 296 142 146 147 151 151 153 154 154 156 157 158 160 162 163 164 167 169 169 170 172 174 174 180 180 181 183 184 337 191 192 193 200 299 206 208 209 209 210 212 214 301 216 216 217 220 303 221 222 222 224 225 225 226 228 230 231 338 232 234 235 236 237 238 239 239 243 244 246 339 247 247 248 302 250 252 255 257 258 263 265 267 308 308 309 421 312 313 313 349 365 379 379 381 382 423 383 383 385 386 387 390 392 393 394 397 399 401 403 406 227 407 408 409 410 411 268 269 270 273 275 276 277 285 288 289 290; attachments ; endTell; mqVersion 331; checksumv 0 3 3395525102 null getNumChars 242 numChars 242 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 14603.0 sumSquares -6.917529027641082E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 845; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6352944410516217044 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6352944410516217044; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; getTable; tell It; columnWidth 1 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Dark Gray; removeColor on; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #691074060265503772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 117; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorRowNames #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal off; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #691074060265503772 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharacterStats.CharacterStats; tell It; toggleSelectedOnly off; endTell; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 748; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1554973807382; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6352944410516217044; tell It; setDefaultOrder 14 13 12 17 15 16 11 34 35 36 41 42 43 45 46 94 40 95 39 96 47 56 57 55 48 49 50 52 58 59 64 65 77 84 85 86 88 37; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 691074060265503772; tell It; setDefaultOrder 4 6 7 11 12 13 14 17 18 21 23 19 20 25 26 28 287 32 34 35 37 38 39 40 41 43 319 320 46 47 48 50 55 1 2 10 15 16 29 30 31 33 45 51 53 54 57 61 62 63 64 65 66 67 68 69 70 72 73 74 77 78 79 79 321 322 318 81 84 86 87 336 88 89 89 91 91 92 94 94 97 98 99 100 286 106 413 414 415 416 108 109 111 112 113 114 115 117 121 122 123 124 126 128 129 129 131 132 133 134 134 135 137 139 139 296 142 146 147 151 151 153 154 154 156 157 158 160 162 163 164 167 169 169 170 172 174 174 180 180 181 183 184 337 191 192 193 200 299 206 208 209 209 210 212 214 301 216 216 217 220 303 221 222 222 224 225 225 226 228 230 231 338 232 234 235 236 237 238 239 239 243 244 246 339 247 247 248 302 250 252 255 257 258 263 265 267 308 308 309 421 312 313 313 349 365 379 379 381 382 423 383 383 385 386 387 390 392 393 394 397 399 401 403 406 227 407 408 409 410 411 268 269 270 273 275 276 277 285 288 289 290; attachments ; endTell; mqVersion 331; checksumv 0 3 3395525102 null getNumChars 242 numChars 242 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 14603.0 sumSquares -6.917529027641082E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 845; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6352944410516217044 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6352944410516217044; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; getTable; tell It; columnWidth 1 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Dark Gray; removeColor on; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #691074060265503772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 117; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorRowNames #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal off; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #691074060265503772 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharacterStats.CharacterStats; tell It; toggleSelectedOnly off; endTell; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 748; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1554973807394; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6352944410516217044; tell It; setDefaultOrder 14 13 12 17 15 16 11 34 35 36 41 42 43 45 46 94 40 95 39 96 47 56 57 55 48 49 50 52 58 59 64 65 77 84 85 86 88 37; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 691074060265503772; tell It; setDefaultOrder 4 6 7 11 12 13 14 17 18 21 23 19 20 25 26 28 287 32 34 35 37 38 39 40 41 43 319 320 46 47 48 50 55 1 2 10 15 16 29 30 31 33 45 51 53 54 57 61 62 63 64 65 66 67 68 69 70 72 73 74 77 78 79 79 321 322 318 81 84 86 87 336 88 89 89 91 91 92 94 94 97 98 99 100 286 106 413 414 415 416 108 109 111 112 113 114 115 117 121 122 123 124 126 128 129 129 131 132 133 134 134 135 137 139 139 296 142 146 147 151 151 153 154 154 156 157 158 160 162 163 164 167 169 169 170 172 174 174 180 180 181 183 184 337 191 192 193 200 299 206 208 209 209 210 212 214 301 216 216 217 220 303 221 222 222 224 225 225 226 228 230 231 338 232 234 235 236 237 238 239 239 243 244 246 339 247 247 248 302 250 252 255 257 258 263 265 267 308 308 309 421 312 313 313 349 365 379 379 381 382 423 383 383 385 386 387 390 392 393 394 397 399 401 403 406 227 407 408 409 410 411 268 269 270 273 275 276 277 285 288 289 290; attachments ; endTell; mqVersion 331; checksumv 0 3 3395525102 null getNumChars 242 numChars 242 getNumTaxa 38 numTaxa 38 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 14603.0 sumSquares -6.917529027641082E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 845; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6352944410516217044 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6352944410516217044; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; getTable; tell It; columnWidth 1 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Dark Gray; removeColor on; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #691074060265503772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 117; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorRowNames #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Dark Gray; removeColor off; endTell; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal off; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #691074060265503772 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharacterStats.CharacterStats; tell It; toggleSelectedOnly off; endTell; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 748; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 773; setLocation 50 169; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;