#NEXUS [written Sat Apr 29 12:48:02 MDT 2017 by Mesquite version 3.03 (build 702) at Javiers-MacBook-Pro.local/192.168.1.65] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Leptuca_beebei Leptuca_stenodactylus Afruca_tangeri Uca_intermedia Uca_heteropleura Uca_stylifera Uca_major Uca_monilifera Uca_princeps Uca_maracoani Uca_insignis Uca_ornata ?Uca_marinae Uca_antiqua Uca_ornata_Bique ; END; BEGIN CHARACTERS; TITLE Character_Matrix_Uca_78_Characters; DIMENSIONS NCHAR=78; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2"; CHARSTATELABELS 1 'Epibranchial region without (0) or with (1) setae', 2 'Minor ischium without (0) or with (1) a large tubercle on the distal ventral anterior margin', 3 'Minor gape width is narrower than half of adjacent dactyl (0), between half and full width of adjacent dactyl (1), or greater than the width of the adjacent dactyl (2).', 4 'Minor cheliped without (0) or with (1) serrations in the gape', 5 'Anterodorsal margin of major merus is without (0) or with (1) tuberculation', 6 'Anterodorsal margin of major merus without (0) or with (1) a distal tooth', 7 'Anterodorsal margin of major merus without (0) or with (1) a large convex flange', 8 'Dorsal margin of major merus is without (0) or with (1) pile', 9 'Large tooth absent (0) or present (1) from proximal anterodorsal margin of major carpus', 10 'Major carpus without (0) or with (1) dorsal margin pile', 11 'Pile absent (0) or present (1) in the gape of the major cheliped', 12 'Outer major manus dorsal margin is smooth (0) or rough (1)', 13 'Outer major manus without (0) or with (1) a groove outside the dactyl cusp', 14 'Outer major manus with small (0) or large (1) tubercles on the lower surface', 15 'Oblique ridge of the major cheliped terminates at the carpal cavity (0) or the ventral margin (1)', 16 'Major palm without (0) or with (1) a tuberculate ridge running between the oblique ridge and the dactyl', 17 'Middle tubercle row on major pollex is without (0) or with (1) a large median tooth', 18 'Middle tubercle row on major pollex is without (0) or with (1) a large subdistal tooth', 19 'Middle tubercle row on major dactyl is without (0) or with (1) a median tooth', 20 'Middle tubercle row on major dactyl is without (0) or with (1) a small subdistal tooth.', 21 'Inner tubercle row on major dactyl is without (0) or with (1) an extra large tubercle on the inside edge of the dactyl', 22 'Inner tubercle row on major dactyl is absent (0) or present (1) proximally', 23 'Outer tubercle row on major dactyl is absent (0) or present (1) distally', 24 'Inner tubercle row of major pollex extends to the base of the dactyl (0) or past the base of the dactyl (1)', 25 'Length of the major dactyl is less than or equal to the length of the manus (0), between one and two times as long as the manus (1), twice as long or greater than the length of the manus (2)', 26 'Outer median groove of major pollex without (0) or with (1) pile', 27 'Major pollex is the same width or wider than the dactyl (0) or narrower than the dactyl (1)', 28 'Major dactyl and pollex without (0) or with (1) thin sharp, inward spines', 29 'Major pollex without (0) or with (1) outer surface tuberculation', 30 'Major dactyl without (0) or with (1) outer surface tuberculation', 31 'Outside of major pollex without (0) or with (1) pits (Crane, 1975)', 32 'Merus of the 1st ambulatory leg is slender (0) or broad (1)', 33 'Pile absent (0) or present (1) on the manus of the 1st ambulatory leg', 34 'Pile absent (0) or present (1) on the carpus of the 1st ambulatory leg', 35 'Pile absent (0) or present (1) on the merus of the 1st ambulatory leg', 36 'Pile absent (0) or present (1) on the manus of the 2nd ambulatory leg', 37 'Pile absent (0) or present (1) on the carpus of the 2nd ambulatory leg', 38 'Pile absent (0) or present (1) on the merus of the 2nd ambulatory leg', 39 'Pile absent (0) or present (1) on the manus of the 3rd ambulatory leg', 40 'Pile absent (0) or present (1) on the carpus of the 3rd ambulatory leg', 41 'Pile absent (0) or present (1) on the merus of the 3rd ambulatory leg', 42 'Pile absent (0) or present (1) on the carpus of the 4th ambulatory leg', 43 'Pile absent (0) or present (1) on the merus of the 4th ambulatory leg', 44 'Large teeth absent (0) or present (1) on posteroventral margin of the merus of the 1st ambulatory leg', 45 'Large teeth absent (0) or present (1) on posteroventral margin of the merus of the 2nd ambulatory leg', 46 'Large teeth absent (0) or present (1) on posteroventral margin of the merus of the 3rd ambulatory leg', 47 'Posteroventral margin serration absent (0) or present (1) on the merus of the 1st ambulatory leg', 48 'Dorsal margin serration absent (0) or present (1) on the merus of the 1st ambulatory leg', 49 'Anteroventral margin serration absent (0) or present (1) distally on the merus of the 2nd ambulatory leg', 50 'Anteroventral margin serration absent (0) or present (1) proximally on the merus of the 2nd ambulatory le', 51 'Posteroventral margin serration absent (0) or present (1) on the merus of the 2nd ambulatory leg', 52 'Dorsal margin serration absent (0) or present (1) on the merus of the 2nd ambulatory leg', 53 'Anteroventral margin serration absent (0) or present (1) distally on the merus of the 3rd ambulatory leg', 54 'Anteroventral margin serration absent (0) or present (1) proximally on the merus of the 3rd ambulatory leg', 55 'Posteroventral margin serration absent (0) or present (1) on the merus of the 3rd ambulato', 56 'Dorsal margin serration absent (0) or present (1) on the merus of the 3rd ambulatory leg', 57 'Anteroventral margin serration absent (0) or present (1) distally on the merus of the 4th ambulatory leg', 58 'Anteroventral margin serration absent (0) or present (1) proximally on the merus of the 4th ambulatory leg', 59 'Posteroventral margin serration absent (0) or present (1) on the merus of the 4th ambulatory leg', 60 'Dorsal margin serration absent (0) or present (1) on the merus of the 4th ambulatory leg', 61 'Width of the eyebrow is narrower (0) or equal/wider (1) than the eyestalk', 62 'Suborbital crenulations are fused/missing from the entire margin (0) or run the full length of the margin (1)', 63 'Vertical lateral margin of carapace extends subdorsally (0) or to dorsal surface (1)', 64 'Carapace convexity is gently rounded (0), flat (1), or strongly convex (2)', 65 'Anterolateral margins of carapace are convergent (0), parallel (1), or divergent (2)', 66 'Anterolateral angles of carapace shape is acute (0) or square (1)', 67 'Anterolateral angles point toward the front (0), at an angle (1), or to the side (2)', 68 'Dorsolateral margins of carapace consist of a microscopically beaded line of tubercles (0) or large, widely spaced tubercles (1)', 69 'Caparace is smooth (0) or rough (1)', 70 'Large tubercle absent (0) or present (1) at posterior end of dorsal-lateral margins', 71 'Gonopod has no/slight (0) or strong (1) torsion', 72 'Gonopod thumb is absent (0) or present (1)', 73 'Anterior flange of gonopod is small (0) or large (1)', 74 'Anterior flange of gonopod ends at pore (0) or above pore (1)', 75 'Posterior flange of gonopod ends at pore (0) or above pore (1)', 76 'Gonopod tip is a blunt (0) or a projecting tube (1)', 77 'Inner process of gonopod is a sharp spine (0), fleshy and tumid (1), or a flat triangular shelf (2)', 78 'Gonopod without (0) or with (1) large flat projection below the base of the tube' ; MATRIX Leptuca_beebei 1011100001101010100001011-0000000000000000000011111111110011110021200001---120 Leptuca_stenodactylus 1011100001101010100001112-0000000000000000000011111111111111111010100001---120 Afruca_tangeri 0101101000000100000001111?0010000000000000000011101110111011111021001001111010 Uca_intermedia 1011101101110101010111010100010100000000000000110011001100100110111000100001?0 Uca_heteropleura 1011101101111100010110111000010100000000000000111111111111110100011000000001?1 Uca_stylifera 0000001010011111101010012000001100000000000000100010001000100100011000100001?0 Uca_major 1000101001011111101010111100110000000000000000110111011101110110001000100011?0 Uca_monilifera ?????????????????????????????????????????????????????????????????????????????? Uca_princeps 101110000111010110101011100001000000000000000011111111111111111000000001100001 Uca_maracoani 01001100110111010010011021110011111111111110000000000000000011111011110011?010 Uca_insignis 01001100110111010010011021110011111111111110000000000000000011111010110011?010 Uca_ornata 110011001111100000000110211100110111011011111100000000000000100100111100000100 ?Uca_marinae ?1??110?1???1000000001102?110011??11??1?1?11110000000000000010010011110??????? Uca_antiqua ????????1??110??0000011?2?110011??????1?1?1??0?????????0??????0110?111???????? Uca_ornata_Bique ?1??110????11000000001102?110011???????????111000000000000001001001111???????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Character_Matrix_Uca_78_Characters) = unord: 1 - 78; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Character_Matrix_Uca_78_Characters) = 'Mk1 (est.)': 1 - 78; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493491683066; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1385903100647468630; tell It; setDefaultOrder 6 5 9 10 11 12 13 7 13 14 15 16 17 18 19; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5720646046660853160; mqVersion 303; checksumv 0 3 4157216207 null getNumChars 78 numChars 78 getNumTaxa 15 numTaxa 15 short true bits 7 states 7 sumSquaresStatesOnly 2472.0 sumSquares 2472.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 260; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1167 715; setLocation 371 1103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1385903100647468630 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1385903100647468630; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 643; setLocation 371 1103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1385903100647468630 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 1046.1289375372747.6527803999004665060; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 643; setLocation 371 1103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 12; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleColorAssigned off; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1,2,(3,(9,(5,(4,7,(6,(14,(11,10),(12,13,15))))))));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5720646046660853160 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 643; setLocation 371 1103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames on; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.stratigraphictools.ColorScaleCells.ColorScaleCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #5720646046660853160 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; getTable; tell It; rowNamesWidth 955; columnWidth 1 43; columnWidth 2 68; columnWidth 3 87; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 643; setLocation 371 1103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;